Part I: Bacterial Pathogen Detection and Quantification in Food
1. Accelerated Sample Preparation for Fast Salmonella Detection in Poultry Products
Eduardo Ximenes, Seockmo Ku, Lori Hoagland, Michael R. Ladisch
2. Direct or DNA Extraction-free Amplification and Quantification of Foodborne Pathogens
Maggie R. Williams and Syed A. Hashsham
3. The Use of Multiplex Real Time PCR for the Simultaneous Detection of Food-borne Bacterial Pathogens
Alejandro Garrido-Maestu, David Tomás Fornés, and Marta Prado Rodríguez
4. Sequence Specific End Labelling of Oligonucleotides (SSELO)-based Microbial Detection
Tanja Kostic and Levente Bodrossy
5. Rapid on-site Detection and Quantification of Food-borne Pathogens Using Microfluidic Devices
Nobuyasu Yamaguchi
6. Modified Bacteriophage Tail Fiber Proteins for Labeling, Immobilization, Capture, and Detection of Bacteria
Matthew Dunne and Martin J. Loessner
7. EIS-based Biosensors in Foodborne Pathogen Detection with a Special Focus on Listeria monocytogenes
Palmiro Poltronieri, Elisabetta Primiceri, and Rajeswaran Radhakrishnan
Part II: Phenotypic and Metabolic Characterization of Foodborne Pathogens
8. Method to Study the Survival Abilities of Foodborne Bacterial Pathogens under Food Processing Conditions
Olivier Habimana
9. Viability Detection of Foodborne Bacterial Pathogens in Food Environment by PMA-qPCR and by Microscopy Observation
Thomas Brauge, Graziella Midelet-Bourdin, and Christophe Soumet
10. Isolation of Bacterial RNA from Foods Inoculated with Pathogens
Deepti Tyagi, Autumn L. Kraft, and Teresa M. Bergholz
11. The use of Two-dimensional Electrophoresis to Explore Foodborne Bacterial Pathogens Responses to Gastrointestinal Stress
Denise Schrama and Maria Leonor Faleiro
12. Identification of Putative Biomarkers Specific to Food-borne Pathogens Using Metabolomics
Snehal R. Jadhav, Rohan M. Shah, Avinash V. Karpe, David J. Beale, Konstantinos A. Kouremenos, and Enzo A. Palombo
13. Characterization of Bacterial Membrane Fatty Acid Profiles for Biofilm Cells
Florence Dubois-Brissonnet
14. High Content Screening Confocal Laser Microscopy (HCS-CLM) to Characterize Biofilm
4D Stuctural Dynamic of Food-borne Pathogens
Alexis Canette, Julien Deschamps, and Romain Briandet
15. Static Immersion and Injection Methods for Live Cell Imaging of Foodborne Pathogen Infections in Zebrafish Larvae
Macarena A. Varas, Javiera Ortíz-Severín, Andrés E. Marcoleta, Carlos A. Santiviago , Miguel L. Allende, and Francisco P. Chávez
16. Use of C. elegans Diapause to Study Transgenerational Responses to Pathogen Infection
Francisco P. Chávez and Andrea Calixto
Part III: NGS and Modeling Approaches
17. Utilizing the public GenomeTrakr Database for Foodborne Pathogen Traceback
Ruth E. Timme, Maria Sanchez Leon, and Marc W. Allard
18. The Establishment of a Standarized 16srDNA Library Preparation to Enable the Analysis of the Microbiome in Poultry Processing Using the Illumina MiSeq Platform
Kristina M. Feye and Steven C. Ricke
19. Exploring Foodborne Pathogen Ecology and Antimicrobial Resistance in the Light of Shotgun Metagenomics
Arnaud Bridier
20. Modelling Growth of Listeria and Lactic Acid Bacteria in Food Environments
P. Dalgaard and O. Mejlholm
21. Network Biology Approaches to Identify Molecular and Systems-level Differences between Salmonella Pathovars
Marton Olbei, Robert A. Kingsley, Tamas Korcsmaros, and Padhmanand Sudhakar